Projects/Bioinformatics Research Platform

Bioinformatics Research Platform

Completed

A no-code, polyglot environment for bioinformatics EDA and ML inference

Vision

The goal was to accelerate all bioinformaticians and democratize data analysis, enabling non-technical domain experts to perform complex analyses that were previously inaccessible without coding skills.

Crucially, this abstraction could not come at the cost of capability. Technical bioinformaticians needed to retain the full power and flexibility of their scripting environments, ensuring they didn't feel restricted by a "dumbed-down" tool.

Problem Statement

Before this platform, creating new analysis applications was a slow, repetitive process:

  • Slow Time-to-Market: Building a new app took weeks of dedicated engineering time.
  • Siloed Ecosystems: Tools were fragmented between R and Python, forcing teams to choose one ecosystem and lose access to niche libraries in the other.
  • Lack of Standards: There were no consistent CI/CD or DevOps practices, leading to fragile deployments.

User Stories

  • As a non-technical researcher, I want to perform exploratory data analysis (EDA) using a GUI so I can find insights without learning R or Python.
  • As a bioinformatician, I want to leverage specific R packages (like Bioconductor) alongside Python ML libraries in the same workflow.
  • As an engineer, I want to spin up a new standardized application in days rather than weeks, with built-in CI/CD.

Platform Capabilities

  • Rapid Application Development: Consolidated underlying frameworks to reduce new app creation time from weeks to days.
  • Polyglot Support: Enabled seamless interoperability between R (Shiny) and Python, allowing access to the full breadth of bioinformatics and ML libraries in both ecosystems.
  • No-Code Interface: Intuitive GUI for complex statistical analysis, machine learning inference, and multi-omic interoperability.
  • Professional DevOps: Standardized CI/CD pipelines and deployment practices for stability and speed.